学术论文 1. Zhang C, Sun Y, Wang D, Sun W, Yu Y, Hu Z, Yu S*. Dissection of heterotic loci for grain yield using interconnected chromosome segment substitution lines in rice. The Crop J (2021). https://doi.org/10.1016/j.cj.2021.07.002 2. Li J, Tang B, Li Y, Li C, Guo M, Chen H, Han S, Li J, Lou Q, Sun W, Wang P, Guo H, Ye W, Zhang Z, Zhang H, Yu S, Zhang L, Li Z*. Rice SPL10 positively regulates trichome development through expression of HL6 and auxin-related genes. J Integr Plant Biol (2021) 8:1521–1537 3. Zhou H, Xia D, Zhao D, Li Y, Li P, Wu B, Gao G, Zhang Q, Wang G, Xiao J, Li X, Yu S, Lian X, He Y*. The origin of Wx la provides new insights into the improvement of grain quality in rice. J Integr Plant Biol (2021) 63:878-888 4. Zhou H, Xia D, Li P, Ao Y, Xu X, Wan S, Li Y, Wu B, Shi H, Wang K, Gao G, Zhang Q, Wang G, Xiao J, Li X, Yu S, Lian X, He Y*. Genetic architecture and key genes controlling the diversity of oil composition in rice grains. Mol Plant (2021) 14(3):456-469 5. Nakhla WR, Sun W, Fan K, Yang K, Zhang C, Yu S*. Identification of QTLs for salt tolerance at the germination and seedling stages in rice. Plant (2021) 10:428 6. Wang D, Sun W, Yuan Z, Sun Q, Fan K, Zhang C, Yu S*. Identification of a novel QTL and candidate gene associated with grain size using chromosome segment substitution lines in rice. Sci Rep (2021) 11:189 7. Yuan Z, Fan K, Wang Y, Tian L, Zhang C, Sun W, He H, Yu S*. OsGRETCHENHAGEN3-2 modulates rice seed storability via accumulation of abscisic acid and protective substances. Plant Physiology (2021)186: 469–482 8. Zhang CP, Wang DW, Wang J, Sun Q, Tian L, Tang X, Yuan Z, He H*, Yu S*. Genetic dissection and validation of chromosomal regions for transmission ratio distortion in intersubspecific crosses of rice. Front Plant Sci (2020) 11:563548. Doi: 10.3389/fpls.2020.563548 9. Yu S#, Ali J#, Zhang CP, Li ZK*, Zhang Q*. Genomic breeding of green super rice varieties and their deployment in Asia and Africa. Theor Appl Genet (2020) 133:1427–1442 10. Zhang CP, Yuan ZY, Wang YT, Sun WQ, Tang X, Sun YJ , Yu S*. Genetic dissection of seed dormancy in rice (Oryza sativa L.) by using two mapping populations derived from common parents. Rice (2020) 13: 52 11. Zeng X, Yuan H, Dong X, Peng M, Jing X, Xu Q, Tang T, Wang Y, Zha S, Gao M, Li C, Shu C, Wei Z, Qimei W, Basang Y, Dunzhu J, Li Z, Bai L, Shi J, Zheng Z, Yu S, Fernie AR, Luo J, Nyima T. Genome-wide dissection of co-selected UV-B responsive pathways in the UV-B adaptation of Qingke. Mol Plant (2020) 13:112-127 12. Yuan S, Wang YT, Zhang CP, He H*, Yu S*. Genetic dissection of seed dormancy using chromosome segment substitution lines in rice (Oryza sativa L.). Int J Mol Sci (2020) 21: 1344 13. Gao DW, Sun WQ, Wang DW, Dong HL, Zhang R, Yu S*. A xylan glucuronosyltransferase gene exhibits pleiotropic efects on cellular composition and leaf development in rice. Sci Rep (2020) 10: 3726 14. Wang P#, Xiong Y#, Gong R, Yang Y, Fan Kai, Yu S*. A key variant in the cis-regulatory element of flowering gene Ghd8 associated with cold tolerance in rice. Sci Rep (2019) 9:9603 15. Wang P, Gong R, Yang Y, Yu S*. Ghd8 controls rice photoperiod sensitivity by forming a complex that interacts with Ghd7. BMC Plant Biology (2019) 19:462 16. Yuan Z, Fan K, Xia L, Ding X, Tian L, Sun W, He H, Yu S*. Genetic dissection of seed storability and validation of candidate gene associated with antioxidant capability in rice (Oryza sativa L.). Int J Mol Sci (2019) 20: 4442 17. Tang X, Gong R, Sun W, Zhang C, Yu S*. Genetic dissection and validation of candidate genes for flag leaf size in rice (Oryza sativa L.). Theor Appl Genet (2018) 131: 801-815 18. Gong R, Cao HS, Zhang J, Xie K, Wang DW, Yu S*. Divergent functions of the GAGA-binding transcription factor family in rice. The Plant J (2018) 94: 32-47 19. Chen J#, Wang JL#, Chen W, Sun WQ, Peng M, Yuan ZY, Shen SQ, Xie K, Jin C, Sun YY, Liu XQ, Fernie AR, Yu S*, Luo J*. Metabolome analysis of multi-connected biparental chromosome segment substitution line populations. Plant Physiology (2018) 178:612-625 20. Sun W, Gao D, Xiong Y, Tang X, Xiao X, Wang C, Yu S*. Hairy Leaf 6, an AP2/ERF transcription factor, interacts with OsWOX3B and regulates trichome formation in rice. Mol Plant (2017) 10: 1417–1433 21. Zhang J, Chen LL, Xing F, Kudrna DA, Yao W, Copetti D, Mu T, Li W, Song JM, Xie W, Lee S, Talag J, Shao L, An Y, Zhang CL, Ouyang Y, Sun S, Jiao WB, Lv F, Du B, Luo M, Maldonado CE, Goicoechea JL, Xiong L, Wu C, Xing Y, Zhou DX, Yu S, Zhao Y, Wang G, Yu Y, Luo Y, Zhou ZW, Hurtado BE, Danowitz A, Wing RA, Zhang Q*. Extensive sequence divergence between the reference genomes of two elite indica rice varieties Zhenshan 97 and Minghui 63. Proc Natl Acad Sci USA. (2016) 113(35): E5163–71 22. Zhang HW, Fan YY, Zhu YJ, Chen JY, Yu S, Zhuang J*. Dissection of the qTGW1.1 region into two tightly-linked minor QTLs having stable effects for grain weight in rice. BMC Genetics (2016)17: 98 23. Wang X, Li L, Yang Z, Zheng X, Yu S, Xu C, Hu Z. Predicting rice hybrid performance using univariate and multivariate GBLUP models based on North Carolina mating design II. Heredity (2016) 1–9 24. Sun W, Zhou Q, Yao Y, Qiu X, Xie K, Yu S*. Identification of genomic regions and the isoamylase gene for reduced grain chalkiness in rice. PLoS ONE (2015) 10: e0122013. doi:10.1371/journal.pone.0122013 25. Xie W, Wang G, Yuan M, Yao W, Lyu K, Zhao H, Yang M, Li P, Zhang X, Yuan J, Wang Q, Liu F, Dong H, Zhang L, Li X, Meng X, Zhang W, Xiong L, He Y, Wang S, Yu S, Xu C, Luo J, Li X, Xiao J, Lian X, Zhang Q*. Breeding signatures of rice improvement revealed by a genomic variation map from a large germplasm collection. Proc Natl Acad Sci USA (2015) 112(39): E5411–5419 26. Wang Q, Xie W, Xing H, Yan J, Meng X, Li X, Fu X, Xu J, Lian X, Yu S, Xing Y, Wang G*. Genetic architecture of natural variation in rice chlorophyll content revealed by a genome-wide association study. Mol Plant (2015) 8:946–57 27. Wu J, Feng F, Lian X, Teng X, Wei H, Yu H, Xie W, Yan M, Fan P, Li Y, Ma X, Liu H, Yu S, Wang G, Zhou F, Luo L, Mei H*. Genome-wide Association Study (GWAS) of mesocotyl elongation based on re-sequencing approach in rice. BMC Plant Biol (2015) 15:218 28. Chen W, Gao Y, Xie W, Gong L, Lu K, Wang W, Li Y, Liu X, Zhang H, Dong H, Zhang W, Zhang L, Yu S, Wang G, Lian X, Luo J*. Genome-wide association analyses provide genetic and biochemical insights into natural variation in rice metabolism. Nat Genet (2014) 46 (7): 714 –721 29. Gong L, Chen W, Gao Y, Liu X, Zhang H, Xu C, Yu S, Zhang Q, Luo J*. Genetic analysis of the metabolome exemplified using a rice population. Proc Natl Acad Sci (2013) 110(50):20320-20325 30. Lu L, Shao D, Qiu X, Sun L, Yan W, Zhou X, Yang L, He Y, Yu S, Xing Y. Natural variation and artificial selection in four genes determine grain shape in rice. New Phytol. (2013) 200:1269–1280 31. Yan W, Liu H, Zhou X, Li Q, Zhang J, Lu L, Liu T, Liu H, Zhang C, Zhang Z, Shen G, Yao W, Chen H, Yu S, Xie W, Xing Y*. Natural variation in Ghd7.1 plays an important role in grain yield and adaptation in rice. Cell Res (2013) 23(7):969–71 32. Zhang F, Jiang YZ, Yu S, Ali J, Paterson AH, Khush GS, Xu JL, Gao YM, Fu BY, Lafitte R, Li ZK*. Three genetic systems controlling growth, development and productivity of rice (Oryza sativa L.): a reevaluation of the ‘Green Revolution’. Theor Appl Genet (2013) 126:1011–1024 33. Wang P, Zhou GL, Cui KH, Li ZK, Yu S*. Clustered QTL for source leaf size and yield traits in rice (Oryza sativa L.) Mol Breeding (2012) 29: 99–113 34. Qiu XJ, Gong R, Tan YB, Yu S*. Mapping and characterization of the major quantitative trait locus qSS7 associated with increased length and decreased width of rice seeds. Theor Appl Genet (2012) 125: 1717–1726 35. Qu Z, Li L, Luo J, Wang P, Yu S, Mou T, Zheng X, Hu Z. QTL mapping of combining ability and heterosis of agronomic traits in rice backcross recombinant inbred Lines and hybrid crosses. PLoS ONE (2012) 7(1): e28463 36. Wang P, Xing YZ, Li ZK, Yu S*. Improving rice yield and quality by QTL pyramiding. Mol Breeding (2012) 29:903–913 37. Wang P, Zhou G, Yu H, Yu S. Fine mapping a major QTL for flag leaf size and yield-related traits in rice. Theor Appl Genet (2011) 123:1319–1330 38. Li M, Sun P, Zhou H, Chen S, Yu S*. Identification of quantitative trait loci associated with germination using chromosome segment substitution lines of rice (Oryza sativa L.). Theor Appl Genet (2011) 123:411–420 39. Ding ZH, Wang CR, Chen S, Yu S*. Diversity and selective sweep in the OsAMT1;1 genomic region of rice. BMC Evol Biology (2011) 11: 61. http://www.biomedcentral.com /1471-2148/11/61 40. Kovi MR, Zhang Y, Yu S, Yang G, Yan W, Xing Y*. Candidacy of a chitin-inducible gibberellin-responsive gene for a major locus affecting plant height in rice that is closely linked to Green Revolution gene sd1. Theor Appl Genet (2011) 123:705–714. 41. Wang CR, Chen S, Yu S*. Functional markers developed from multiple loci in GS3 for fine marker-assisted selection of grain length in rice. Theor Appl Genet (2011) 122: 905–913 42. Yan WH#, Wang P#, Chen HX, Zhou HJ, Li QP, Wang CR, Ding ZH, Zhang Y, Yu S*, Xing YZ*, Zhang Q. A Major QTL, Ghd8, plays pleiotropic roles in regulating grain productivity, plant height, and heading date in rice. Mol Plant (2011) 4: 319–330 43. Tan CJ, Sun YJ, Xu HS, Yu S*. Identification of quantitative trait locus and epistatic interaction for degenerated spikelets on the top of panicle in rice. Plant Breeding (2011) 130: 177–184 44. Ali ML, Sanchez PL, Yu S, Lorieux M, Eizenga GC*. Chromosome segment substitution lines: A powerful tool for the introgression of valuable genes from oryza wild species into cultivated rice (O. sativa). Rice (2010) 3: 218–234 45. Wang J, Yu HH, Xie WB, Xing YZ, Yu S, Xu CG, Li XH, Xiao JH, Zhang Q*. A global analysis of QTLs for expression variations in rice shoots at the early seedling stage. The Plant J (2010) 63: 1063–1074 46. Xie W, Feng Q, Yu H, Huang X, Zhao Q, Xing Y, Yu S, Han B, Zhang Q*. Parent-independent genotyping for constructing an ultrahigh-density linkage map based on population sequencing. Proc Natl Acad Sci USA (2010) 107: 10578–10583 47. Mao HL, Sun SY, Yao JL, Wang CR, Yu S, Xu CG, Li XH, Zhang Q*. Linking differential domain functions of the GS3 protein to natural variation of grain size in rice. Proc Natl Acad Sci. USA (2010) 107: 19579–19584 48. Wen WW, Mei HW, Feng FJ, Yu S, Huang ZC, Wu JH, Chen, Xu XY, Luo L*. Population structure and association mapping on chromosome 7 using a diverse panel of Chinese germplasm of rice (Oryza sativa L.). Theor Appl Genet (2009) 119:459–470 49. Fan CC, Yu S, Wang CR, Xing Y*. A causal C–A mutation in the second exon of GS3 highly associated with rice grain length and validated as a functional marker. Theor Appl Genet (2009) 118:465–472 50. Zhao LN#, Zhou HJ#, Lu LX, Liu L, Li XH, Lin YJ*, Yu S*. Identification of quantitative trait loci controlling rice mature seed culturability using chromosomal segment substitution lines. Plant Cell Rep (2009) 28:247–256 51. Wang Y, Sun YJ, Chen DY and Yu S*. Analysis of quantitative trait loci in response to nitrogen and phosphorus deficiency in rice using chromosomal segment substitution lines. Acta Agron Sin (2009) 35(4): 580–587 52. Zeng B, Li Min, Yang ZY, Tan CJ, Dong HL and Yu S*. Mapping of a novel semisterile pollen QTL in rice. Acta Agron Sin (2009) 35(9): 1584–1589 53. Zhu LH, Zhong DB, Xu JL, Yu S, Li Z*. Differential expression of lodging resistance related QTLs in rice (Oryza sativa L.). Plant Sci (2008) 175: 898–905 54. Xue W, Xing Y, Weng X, Zhao Yu, Tang W, Wang Lei, Zhou H, Yu S, Xu C, Li X, Zhang Q*. Natural variation in Ghd7 is an important regulator of heading date and yield potential in rice. Nature Genet (2008) 40(6):761–767 55. Cui K, Huang J, Xing Y, Yu S, Xu C, Peng S*. Mapping QTLs for seedling characteristics under different water supply conditions in rice (Oryza sativa). Physiologia Plantarum (2008) 132: 53–68 56. Li ZK, Arif M, Zhong DB, Fu BY, Xu JL, Domingo-Rey J, Ali J, Vijayakumar CHM, Yu S, Khush GS*. Complex genetic networks underlying the defensive system of rice (Oryza sativa L.) to Xanthomonas oryzae pv. Oryzae. Proc Natl Acad Sci. USA (2006) 103: 7994–7999 57. Ali AJ, Xu JL, Ismail AM, Fu BY, Vijaykumar CHM, Gao YM, Domingo J, Maghirang R, Yu S, Gregorio G, Yanaghihara S, Cohen M, Carmen B, Mackill D, Li Z*. Hidden diversity for abiotic and biotic stress tolerances in the primary gene pool of rice revealed by a large backcross breeding program. Field Crops Res (2006) 97: 66–76 58. Lafitte HR, Li ZK, Vijayakumar CHM, Gao YM, Shi Y, Xu JL, Fu BY, Yu S, Ali AJ, Domingo J, Maghirang R, Torres R, Mackill D. Improvement of rice drought tolerance through backcross breeding: Evaluation of donors and selection in drought nurseries. Field Crops Res (2006) 97:77–86 59. Zhang ZH, Yu S, Yu T, Huang Z, Zhu Y*. Mapping quantitative trait loci (QTLs) for seedling-vigor using recombinant inbred lines of rice. Field Crop Res (2005) 90:161-170 60. Xu JL, Yu S, Luo LJ, Zhong DB, Mei HW, Li Z*. Molecular dissection of the primary sink size and its related traits in rice. Plant Breeding (2004) 123:43–50 61. Li ZK, Yu S, Lafitte HR, Huang N, Courtois B, Hittalmani S, Vijayakumar CHM, Liu GF, Wang GC, Shashidhar HE, Zhuang JY, Zheng KL, Singh VP, Sidhu JS, Srivantaneeyakul S, Khush GS. QTL x environment interactions in rice. I. Heading date and plant height. Theor Appl Genet (2003) 108: 141–153 62. Yu S#, Xu WJ#, Vijayakumar CH, Ali J, Fu BY, Xu JL, Jiang YZ, Marghirang R, Domingo J, Aquino C, Virmani SS, Li Z*. Molecular diversity and multilocus organization of the parental lines used in the International Rice Molecular Breeding Program. Theor Appl Genet (2003) 108:131–-140 63. Cui KH, Peng SB, Xing YZ, Yu S, Xu CG, Zhang Q*. Molecular dissection of the genetic relationships of source, sink and transport tissue with yield traits in rice. Theor Appl Genet (2003) 106:649–-658 64. Hua JP, Xing YZ, Wu W, Xu CG, Sun X, Yu S, Zhang Q*. Single-locus heterotic effects and dominance by dominance interactions can adequately explain the genetic basis of heterosis in an elite rice hybrid. Proc Natl Acad Sci USA (2003) 100: 2574–2579 65. Cui KH, Peng SB, Xing YZ, Xu CG, Yu S, Zhang Q*. Molecular dissection of seedling-vigor and associated physiological traits in rice. Theor Appl Genet (2002) 105:745–753 66. Hua JP, Xing YZ, Xu CG, Sun XL, Yu S, Zhang Q*. Genetic dissection of an elite rice hybrid revealed that heterozygotes are not always advantageous for performance. Genetics (2002) 162:1885–1895 67. Yu S, JX. Li, CG. Xu, YF. Tan, XH. Li, Zhang Q*. Identification of quantitative trait loci and epistatic interaction for plant height and heading date in rice. Theor Appl Genet (2002) 104: 619–625 68. Li JX, Yu S, Xu CG, Tan YF, Gao YJ, Li XH, Zhang Q*. Analyzing quantitative trait loci for yield using a vegetatively replicated F2 population from a cross between the parents of an elite rice hybrid. Theor Appl Genet (2000) 101: 248–254 69. Tan YF, Xing YZ, Li JX, Yu S, Xu CG, Zhang Q*. Genetic bases of appearance quality of rice grains in Shanyou 63, an elite rice hybrid. Theor Appl Genet (2000) 101:823–829 70. Tan YF, Li JX, Yu S, Xu CG, Zhang Q*. 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