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章元明
发布时间:2017-02-21

                             

基本信息
姓名: 章元明 出生年月: 1965.5
性别: 硕/博导: 博导
民族: 开设课程: 数量遗传学(研究生课程)、生物统计学(本科生)
职称: 教授 研究方向: 统计基因组学、基因分子进化、生物统计学
学位: 农学博士

 

联系方式

办公电话:
            电子邮件:soyzhang@mail.hzau.edu.cn

 

个人简介


硕士研究生调剂信息:

欢迎数学、统计学、生物信息学、计算机科学(偏软件方向)等相关专业的调剂考生与我联系。

 

主要研究方向

1、统计基因组学

主要从事海量组学数据的遗传分析方法学研究,代表性工作有:

1)最早建立了基于IBD混合模型的关联分析方法(Genetics 2005, 169: 2267-2275)、改进了压缩混合模型方法(ECMLM: BMC Biology 2014, 12: 73)和发展了多位点GWAS方法(FASTmrEMMA: Brief Bioinform 2018, 19(4): 700-712; mrMLM: Sci Rep 2016, 6: 19444, 已被引56次; ISIS EM-BLASSO: PLoS Comput Biol 2017, 13: e1005357; pLARmEB: Heredity, 2017, 118(6): 517-524; pKWmEB: Heredity, 2018, 120(3): 208-218)

代码软件包mrMLM v3.1

https://cran.r-project.org/web/packages/mrMLM/index.html

界面软件包mrMLM.GUI v3.2

https://cran.r-project.org/web/packages/mrMLM.GUI/index.html

软件包mrMLM获国家软件著作权(2017SR629973)

 

2)提出了高效检测小效应与连锁QTL的全基因组复合区间作图(genome-wide composite interval mapping, GCIM)(Brief Bioinform, https://doi.org/10.1093/bib/bby058, online, 18 July 2018; Sci Rep 2016, 6: 29951, 入选F1000: https://f1000.com/prime/ext/726563282)。提出了超饱和线性模型参数估计的惩罚最大似然方法(Heredity 2005, 95: 96-104),参与提出Bayesian压缩估计方法(Genetics 2005, 170: 465-480)

代码软件包QTL.gCIMapping v3.1

https://cran.r-project.org/web/packages/QTL.gCIMapping/index.html

界面软件包QTL.gCIMapping.GUI v1.0

https://cran.r-project.org/web/packages/QTL.gCIMapping.GUI/index.html

权软件包QTL.gCIMapping.GUI获国家软件著作权(2018SR682083)

 

3)提出了考虑偏分离位点间上位性的偏分离群体连锁图矫正方法(Heredity 2014, 112: 479-488; TAG 2007, 114: 295-305)

软件包DistortedMap v1.0

http://www.nature.com/articles/hdy2013127Zip files: 1. Supplementary File DistortedMap

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3998779/Supplementary File DistortedMap)

软件包DistortedMap获国家软件著作权(2013SR022005)

 

4)提出了利用部分NCII遗传交配设计进行遗传分析的策略及其分析方法(PLoS ONE 2015, 10(3): e0121034;Sci Rep 2015, 5: 18376)

 

5)系统拓展了主基因+多基因混合遗传分析方法(简称数量性状分离分析方法,该方法在我国广泛应用,已写入教科书)。

SEA软件包(https://cran.r-project.org/web/packages/SEA/index.html

软件包SEA获国家软件著作权(2017SR579357)

 

2、基因分子进化与比较基因组学

目前,主要从事作物基因组变异与复杂性状形成的分子进化机制研究。代表性论文:基因组变异与豆科植物根瘤固氮(MBE 2013,影响因子:14.308;J Proteome Res 2018, 17 (9), 3061–3074,封面论文)、禾本科植物高淀粉含量(MBE 2012,影响因子:10.353)、太湖猪高产仔数(Proceedings B 2017,影响因子:5.611)、大豆高蛋白质含量和油菜高油份含量(BMC Plant Biology 2018)的分子进化机制研究。

 

3、大豆驯化性状的遗传基础

根据大豆简化基因组测序数据,研究了大豆基因组驯化区域,并检测了大豆驯化性状开花时间、种子大小与形状和油份含量的QTNs和候选基因,论文在TAG、Sci Rep和Mol Breeding等上发表论文,其中论文Mol Breeding (2013) 31:785-794为前3%高引用论文,Sci Rep (2015) 5: 9350被引用36次。

 

   学术兼职

1、华中农业大学植物科技学院作物信息研究中心主任

2、Heredity  Associate Editor  2017.1-,英国遗传学会会员(2017-05-01~)

3、Frontiers in Plant Science  Guest Associate Editor  2017.11~

4、PLoS ONE  Associate Editor  2018.12~

4、Scientific Reports  Associate Editor  2017.2~

5、BMC Genetics Associate Editor  2011.01~

6、Canadian Journal of Plant Science  Associate Editor  2011.01~2016.12,加拿大作物学会荣誉会员

7、作物学报  编委  2014.10~

8、Frontiers in Genetics  Review Editor  2011.01~

9、南京农业大学学报(自然科学版) 编委 2007.01~2023.12

10、江苏省第八届现场统计研究会理事  2013.11~2017.11

 

   工作经历

1、华中农业大学植物科技学院教授,主要从事数量遗传学理论与应用研究、作物分子进化研究;

2、南京农业大学农学院作物遗传育种专业,历任副教授(1999.11)和教授(2002.04),从事统计基因组学、基因分子进化和大豆遗传学研究工作;其中,2003.01~2005.01年在美国加州大学Riverside分校做统计遗传与基因组学博士后;

3、西南大学荣昌分校,历任见习助教、助教(1987.12)、讲师(1992.12)、副教授(1995.12);从事生物统计学教学及其应用研究工作。

 

   教育经历

1982/09~1986/07:西南农业大学农学系,本科,学士

1989/09~1992/07:南京农业大学作物遗传育种专业,硕士,导师:盖钧镒教授

1997/08~1998/01:东南大学应用数学系,访问学者

2000/09~2001/12:南京农业大学作物遗传育种专业,博士,导师:盖钧镒教授

2003/01~2005/01:The University of California, Riverside, Dept. of Botany and Plant Science, 博士后,合作导师: Shizhong Xu教授

 

   人才情况

1、教育部新世纪优秀人才支持计划获得者  教育部  2005

2、教育部《生物统计与田间试验》国家精品课程主要负责人  2007

3、湖北省楚天学者特聘教授(2014)  作物遗传育种

4、四川省优秀青年骨干教师  四川省教委  1995

5、入选华中农业大学狮山硕彦计划领军人才B2(2018)

 

   教学情况

1、本科生课程《生物统计学》

2、研究生课程《数量遗传学》、《遗传学研究进展》部分内容和《作物育种学研究进展》部分内容


 

 

科研项目

1、主持国家自然科学基金项目(高通量快速检测含有杂合基因型关联群体的多位点GWAS方法学研究及其软件包研制 31871242)(2018)

2、主持棉花生物学国家重点实验室开放课题(2017)

3、参加NSFC-云南联合基金重点项目(玉米抗灰斑病遗传机制分析、功能位点发掘和育种应用研究U1602261)(2016)

4、主持国家自然科学基金项目(海量SNP、高精度和快速检测的多位点关联分析新方法及其应用研究31571268)(2015)

5、主持华中农业大学引进人才项目1项(2014)

6、参加973项目2项(2006CB101708,2006;2011CB109300,2010)

7、主持国家自然科学基金项目3项(30470998,2004;30671333,2007;30971848,2009);学术指导国家自然科学青年基金项目5项(30900842;31000666;31301004;31301229;31601209)

8、主持教育部新世纪优秀人才支持计划项目1项(2005)

9、主持教育部高校博士点基金项目3项(2006;2010;2012)

10、主持教育部与人事部留学回国人员启动基金项目各1项(2005)

11、主持江苏省自然科学基金项目2项(2005,2008)、重庆市应用基础研究项目1项(1999)

12、主持中央高校基本科研业务费创新团队项目1项(2010)、参与中央高校基本科研业务费项目1项(2012)

13、主持作物遗传与种质创新国家重点实验室自主创新项目1项(2009)

 

发明专利及获奖情况

1、多位点关联分析、多QTL检测、数量性状主基因+多基因混合遗传分析(数量性状分离分析)、偏分离群体连锁图矫正、杂交种育种群体遗传分析等软件包见上面主要研究方向部分;

2、植物数量性状主基因-多基因遗传体系的分离分析方法  教育部自然科学二等奖(排名第2)  2003年度

3、江苏省优秀博士学位论文获得者  江苏省教育厅  2004

4、江苏省优秀硕士学位论文(徐宇)指导教师  2012

5、Canadian Journal of Plant Science的Outstanding Associate Editor(2013年度)、作物学报(2016年度)和The Crop Journal(2017年度)的优秀审稿人、南京农业大学学报优秀编委(2018年度);

6、南京农业大学优秀博士学位论文(何小红)指导教师(2012年度)、优秀硕士学位论文(李其刚)指导教师(2013年度)

7、南京农业大学邹秉文优秀博士(2004年度)、南京农业大学奖教金获得者(2000、2002年度)


 

发表的论文及著作

2019

1. Zhang Yuan-Ming*, Jia Zhenyu, Jim M. Dunwell. Editorial: The Applications of New Multi-Locus GWAS Methodologies in the Genetic Dissection of Complex Traits. Frontiers in Plant Science 9: 100. DOI: 10.3389/fpls.2019.00100

2. Zhang Hongwei#, Wang Xi#, Pan Qingchun#, Li Pei#, Liu Yunjun, Lu Xiaoduo, Zhong Wanshun, Li Minqi, Han Linqian, Juan Li, Wang Pingxi, Li Dongdong, Liu Yan, Li Qing, Yang Fang, Zhang Yuan-Ming*, Wang Guoying*, Li Lin*. QTG-seq accelerates QTL fine mapping through QTL partitioning and whole-genome sequencing on bulked segregant samples. Molecular Plant, online, 2018-12-28, https://doi.org/10.1016/j.molp.2018.12.018.

3. Wen Yang-Jun, Zhang Ya-Wen, Zhang Jin, Feng Jian-Ying, Jim M Dunwell, Zhang Yuan-Ming*. An efficient multi-locus mixed model framework for the detection of small and linked QTLs in F2. Briefings in Bioinformatics, bby058, https://doi.org/10.1093/bib/bby058, 18 July 2018

2018

4. Zhang Zhibin, Jim M Dunwell, Zhang Yuan-Ming*. An integrated omics analysis reveals molecular mechanisms that are associated with differences in seed oil content between Glycine max and Brassica napus. BMC Plant Biology, 2018, 18: 328.

5. Zhang Li#, Liu Jin-Yang#, Gu Huan, Du Yanfang, Zuo Jian-Fang, Zhang Zhibin, Zhang Menglin, Li Pan, Jim M. Dunwell, Cao Yangrong, Zhang Zuxin*, Zhang Yuan-Ming*. Bradyrhizobium diazoefficiens USDA 110-Glycine max interactome provides candidate proteins associated with symbiosis. Journal of Proteome Research 2018, 17(9): 3061-3074. (cover paper)

6. Wen Yang-Jun, Zhang Hanwen, Ni Yuan-Li, Huang Bo, Zhang Jin, Feng Jian-Ying, Wang Shi-Bo, Jim M. Dunwell, Zhang Yuan-Ming*, Wu Rongling*. Methodological implementation of mixed linear models in multi-locus genome-wide association studies. Briefings in Bioinformatics 2018, 19(4): 700-712

7. Wen-Long Ren#, Yang-Jun Wen#, Jim M. Dunwell, Yuan-Ming Zhang*. pKWmEB: integration of Kruskal-Wallis test with empirical Bayes under polygenic background control for multi-locus genome-wide association study. Heredity 2018, 120(3): 208-218

 

2017

8. Li Wen-Ting#, Zhang Meng-Meng#, Li Qi-Gang#, Tang Hui, Zhang Li-Fan, Wang Ke-Jun, Zhu Mu-Zhen, Lu Yun-Feng, Bao Hai-Gang, Zhang Yuan-Ming*, Li Qiu-Yan*, Wu Ke-Liang*, Wu Chang-Xin. Whole-genome resequencing reveals candidate mutations for pig prolificacy. Proceedings of the Royal Society Biological Sciences 2017, 284(1869): 20172437.

9. Zhang Jin#, Feng Jian-Ying#, Ni Yuan-Li, Wen Yang-Jun, Niu Yuan, Tamba Cox Lwaka, Yue Chao, Song Qijian, Zhang Yuan-Ming*. pLARmEB: integration of least angle regression with empirical Bayes for multi-locus genome-wide association studies. Heredity 2017, 118(6): 517-524  (Featured Article)

10. Tamba Cox Lwaka, Ni Yuan-Li, Zhang Yuan-Ming*. Iterative sure independence screening EM-Bayesian LASSO algorithm for multi-locus genome-wide association studies. PLoS Computational Biology 2017, 13(1): e1005357

11. Zhang Yuan-Ming*, Zhang Yinghao, Guo Mingyue. Epigenetic game theory and its application in plants. Physics of Life Reviews 2017, 20: 158-160

 

2016

12. Wang Shi-Bo, Wen Yang-Jun, Ren Wen-Long, Ni Yuan-Li, Zhang Jin, Feng Jian-Ying, Zhang Yuan-Ming*. Mapping small-effect and linked quantitative trait loci for complex traits in backcross or DH populations via a multi-locus GWAS methodology. Scientific Reports 2016, 6: 29951

13. Zeng Yan-Da, Sun Jun-Ling, Bu Su-Hong, Deng Kang-Sheng, Tao Tao, Zhang Yuan-Ming, Zhang Tianzhen, Du Xiong-Ming*, Zhou Bao-Liang*. EcoTILLING revealed SNPs in GhSus genes that are associated with fiber- and seed-related traits in upland cotton. Scientific Reports 2016, 6: 29250

14. Zhang Li, Wang Shi-Bo, Li Qi-Gang, Song Jian, Hao Yu-Qi, Zhou Ling, Zheng Huan-Quan, Jim M Dunwell, Zhang Yuan-Ming*. 2016. An integrated bioinformatics analysis reveals divergent evolutionary pattern of oil biosynthesis in high- and low-oil plants. PLoS ONE, 11(5): e0154882

15. Zhou Ling, Luo Longhai, Zuo Jian-Fang, Yang Linfeng, Zhang Li, Guang Xuanmin, Niu Yuan, Jian Jianbo, Geng Qing-Chun, Liang Liping, Song Qijian, Jim M Dunwell, Wu Zhenzhen, Wen Jia, Liu Yu-Qin, Zhang Yuan-Ming*. 2016. Identification and validation of candidate genes associated with domesticated and improved traits in soybean. The Plant Genome 9, doi:10.3835/plantgenome2015. 09.0090

16. Wang Shi-Bo, Feng Jian-Ying, Ren Wen-Long, Huang Bo, Zhou Ling, Wen Yang-Jun, Zhang Jin, Jim M. Dunwell, Xu Shizhong*, Zhang Yuan-Ming*. 2016. Improving power and accuracy of genome-wide association studies via a multi-locus mixed linear model methodology. Scientific Reports 6: 19444

 

2015

17. Wen Jia, Zhao Xinwang, Wu Guorong, Xiang Dan, Liu Qing, Bu Su-Hong, Yi Can, Song Qijian, Jim M. Dunwell, Tu Jinxing, Zhang Tianzhen, Zhang Yuan-Ming*. Genetic dissection of heterosis using epistatic association mapping in a partial NCII mating design. Scientific Reports 2015, 5: 18376

18. Zhou Ling#, Wang Shi-Bo#, Jian Jianbo#, Geng Qing-Chun, Wen Jia, Song Qijian, Wu Zhenzhen, Li Guang-Jun, Liu Yu-Qin, Jim M. Dunwell, Zhang Jin, Feng Jian-Ying Feng, Niu Yuan, Zhang Li, Ren Wen-Long, Zhang Yuan-Ming*. 2015. Identification of domestication-related loci associated with flowering time and seed size in soybean with the RAD-seq genotyping method. Scientific Reports 5: 9350

19. Bu Su-Hong#, Zhao Xinwang#, Yi Can, Wen Jia, Tu Jinxing, Yuan-Ming Zhang*. Interacted QTL mapping in partial NCII design provides evidences for breeding by design. PLoS ONE 10(3): e0121034

20. Li Lanzhi, He Xiaohong, Zhang Hongyan, Wang Zhiming, Sun Congwei, Mou Tongmin, Li Xinqi, Zhang Yuanming, Hu Zhongli*. 20015. Genomewide mapping reveals a combination of different genetic effects causing the genetic basis of heterosis in two elite rice hybrids. Journal of Genetics 94(2): 261-270

 

2014

21. Li Meng, Liu Xiaolei, Peter Bradbury, Yu Jianming, Zhang Yuan-Ming*, Rory J Todhunter, Edward S Buckler, Zhang Zhiwu*. 2014. Enrichment of statistical power for genome-wide association studies. BMC Biology 12:73

22. Xie S-Q, Feng J-Y, Zhang Y-M*. 2014. Linkage group correction using epistatic distorted markers in F2 and backcross populations. Heredity 112: 479-488

23. Zhang W-J, Niu Y, Bu S-H, Li M, Feng J-Y, Zhang J, Yang S-X, Medrine Mmyi Odinga, Wei S-P, Liu X-F, Zhang Y-M*. 2014. Epistatic association mapping for alkaline and salinity tolerance traits in the soybean germination stage. PLoS ONE 9(1): e84750

24. Xie F-T, Niu Y, Zhang J, Bu S-H, Zhang H-Z, Geng Q-C, Feng J-Y, Zhang Y-M*. 2014. Fine mapping of quantitative trait loci for seed size traits in soybean. Molecular Breeding 34(4): 2165-2179

 

2013

25. Li Qi-Gang, Zhang Li, Li Chun, Jim M. Dunwell, Zhang Y-M*. 2013. Comparative genomics suggests that an ancestral polyploidy event leads to enhanced root nodule symbiosis in the Papilionoideae. Molecular Biology and Evolution 30(12): 2602-2611

26. Li Q-G, Zhang Y-M*. 2013. The origin and functional transition of P34. Heredity 110(3): 259-266

27. Wen Jia, Can Van Toan, Zhang Y-M*. 2013. Multi-QTL mapping for quantitative traits using distorted markers. Molecular Breeding 31(2): 395-404

28. Niu Yuan, Xu Yu, Liu Xiao-Feng, Yang Sheng-Xian, Wei Shi-Ping, Xie Fang-Teng, Zhang Yuan-Ming*. 2013. Association mapping for seed size and shape traits in soybean cultivars. Molecular Breeding 31(4): 785-794

29. Xie Shang-Qian, Jia Wen, Zhang Yuan-Ming*. 2013. Multi-QTL mapping for quantitative traits using epistatic distorted markers. PLoS ONE 8(7): e68510

30. Feng J-Y, Zhang J, Zhang W-J, Wang S-B, Han S-F, Zhang Y-M*. 2013. An efficient hierarchical generalized linear mixed model for mapping QTL of ordinal traits in crop cultivars. PLoS ONE 8(4): e59541

31. Zhang T*, Qian N, Zhu X, Chen H, Wang S, Mei H, Zhang Y. 2013. Variations and transmission of QTL alleles for yield and fiber qualities in upland cotton cultivars developed in China. PLoS ONE 8(2): e57220

 

2012

32. Li C, Li Q-G, Jim M. Dunwell, Zhang Y-M*. 2012. Divergent evolutionary pattern of starch biosynthetic pathway genes in grasses and dicots. Molecular Biology and Evolution 29(10): 3227- 3236

33. Zhang J, Yue C, Zhang Y-M*. 2012. Bias correction for estimated QTL effects using the penalized maximum likelihood method. Heredity 108: 396-402

34. Li C, Li M, Jim M. Dunwell, Zhang Y-M*. 2012. Gene duplication and accelerated evolutionary rate contribute to the higher ability of protein synthesis in dicots. BMC Evolutionary Biology 12: 15

35. He Xiao-Hong, Hu Zhongli, Zhang Yuan-Ming*. 2012. Genome-wide mapping of QTL associated with heterosis in the RIL-based NCIII design. Chin Sci Bull 57(21): 2655-2665

36. Liu R, Wang B, Guo W, Qin Y, Wang L, Zhang Y, Zhang T*. 2012. Quantitative trait loci mapping for yield and its components by using two immortalized populations of a heterotic hybrid in Gossypium hirsutum L. Molecular Breeding 29(2): 297-311

37. Zhou Jiangbo, Zhang Yuan-Ming, Lü Haiyan, You Aiqing, Zhu Lili, He Guangcun*. 2012. Transmission of important chromosomal regions under selection revealed in rice pedigree breeding programs. Molecular Breeding 30(2): 717-729

38. Chen X, Guo W, Liu B, Zhang Y, Song X, Zhang L, Zhang T*. 2012. Molecular mechanisms of fiber differential development between G. barbadense and G. hirsutum revealed by genetical genomics. PLoS ONE 7(1): e30056

39. Guo H-L, Li Y, Xuan J-P, Liu J-X*, Zhang Y-M, Zheng Yi-Qi. 2012. Association of molecular markers with cold tolerance and green period in Zoysiagrass (Zoysia Willd.). Breeding Science 62: 320-327

 

2011

40. Li C, Zhang Y-M*. 2011. Molecular evolution of glycinin and β-conglycinin gene families in soybean (Glycine max L. Merr.). Heredity 106: 633-641

41. Xu Y, Li H-N, Li G, Wang X, Cheng L, Zhang Y-M*. 2011. Mapping quantitative trait loci for seed size traits in soybean (Glycine max L. Merr.). Theor Appl Genet 122: 581-594

42. He X-H, Qin H, Hu Z, Zhang T, Zhang Y-M*. 2011. Mapping of epistatic quantitative trait loci in four-way crosses. Theor Appl Genet 122: 33-48

43. Lü H-Y, Liu X-F, Wei S-P, Zhang Y-M*. 2011. Epistatic association mapping in homozygous crop cultivars. PLoS ONE 6(3): e17773

44. He X-H, Zhang Y-M*. 2011. A complete solution for dissecting pure main and epistatic effects of QTL in triple testcross design. PLoS ONE 6(9): e24575

45. Kuang F-L, Wang X, Zhou L, Zhang Y-M*. 2011. Linkage graph analysis: A linkage-group-based QTL synthesis analysis approach. China Sci Bull 56: 1092-1099

46. Zhu X, Ai N, Zhang Y, Guo W, Zhang T-Z*. 2011. Relationships between differential gene expression and heterosis in cotton hybrids developed from the foundation parent CRI-12 and its pedigree-derived lines. Plant Science 180: 221-227

 

2010

47. Dou BD*, Hou BW, Wang F, Yang JB, Ni ZF, Sun QX, Zhang Y-M*. 2010. Further mapping of quantitative trait loci for female sterility in wheat. Genetics Research 92(1): 63-70

48. Liu G, Li M, Wen J, Du Y, Zhang Y-M*. 2010. Functional mapping of quantitative trait loci associated with rice tillering. Molecular Genetics and Genomics 284: 263-271

49. Li G-J, LI H-N, Cheng L-G, Zhang Y-M*. 2010. QTL Analysis for Dynamic Expression of Chlorophyll Content in Soybean (Glycine max L. Merr.). Acta Agronomica Sinica 36(2): 242-248

 

2009

50. Lü H-Y, Li M, Yao L-L, Li G-J, Lin F, Zhang Y-M*. 2009. Multi-loci in silico mapping in inbred lines. Heredity 103: 346-354

51. Zhang Y-M*, Gai JY. 2009. Methodologies for segregation analysis and QTL mapping in plant. The third International Conference on Quantitative Genetics. Genetica 136: 311-318

 

2008

52. He X-H, Zhang Y-M*. 2008. Mapping epistatic quantitative trait loci underlying endosperm traits using all markers on the entire genome in random hybridization design. Heredity 101: 39-47

53. Zhang Y-M*, Lü H-Y, Yao L-L. 2008. Multiple quantitative trait loci Haseman-Elston regression using all markers on the entire genome. Theor Appl Genet 117: 683-690

54. Zhu C, Zhang Y-M*, Guo Z. 2008. Mapping quantitative trait loci for binary trait in the F2:3 design. Journal of Genetics 87(3): 201-207

55. Qin H, Guo W, Zhang Y-M, Zhang TZ*. 2008. QTL mapping of yield and fiber traits based on a four-way cross population in Gossypium hirsutum L. Theor Appl Genet 117: 883-894

 

2007

56. Zhu C, Wang C, Zhang Y-M*. 2007. Modeling segregation distortion for viability selection I. Reconstruction of linkage maps with distorted markers. Theor Appl Genet 114: 295-305

57. Zhu C, Zhang Y-M*. 2007. An EM algorithm for mapping segregation distortion loci. BMC Genetics 8: 82

58. Zhu C, Huang J, Zhang Y-M*. 2007. Mapping binary trait loci in the F2:3 design. Journal of Heredity 98: 337-344

59. Geng J, Zhu C, Zhang X, Cheng Y, Zhang Y-M*, Hou X*. 2007. A genetic linkage map of nonheading chinese cabbage. Journal of American Society for Horticultural Science 132: 816-823

60. Zhu C, Wang F, Wang JLi GZhang H*, Zhang Y-M*. 2007. Reconstruction of linkage maps in the segregation populations of backcross, double haploid and recombinant inbred line. Chin Sci Bull 52: 1648-1653

61. Wang X, Hu Z, Wang W, Li Y, Zhang Y-M, Xu C*. 2007. A mixture model approach to the mapping of QTL controlling endosperm traits with bulked samples Status. Genetica 132: 59-70

 

2006

62. Zhang Y-M*. 2006. Advances on methods for mapping QTL in plants. China Sci Bull 51: 2223-2231

63. Zhang Y-M*. 2006. Shrinkage estimation method for mapping multiple quantitative trait loci. Acta Genetica Sinica 33(10): 861-869

64. Xue Y, Wan J*, Jiang L, Wang C, Liu L, Zhang Y-M, Zhai H. 2006. Identification of quantitative trait loci associated with aluminum tolerance in rice (Oryza sativa L.). Euphytica 150: 37-45

 

2005

65. Zhang Y-M, Mao Y, Xie C, Smith H, Luo L, Xu S*. 2005. Mapping quantitative trait loci using naturally occurring genetic variance among commercial inbred lines of maize (Zea mays L.). Genetics 169: 2267-2275

66. Wang H, Zhang Y-M, Li X, Masinde GL, Mohan S, Baylink DJ, Xu S*. 2005. Bayesian shrinkage estimation of quantitative trait loci parameters. Genetics 170: 465-480 (Comment: Nat Rev Genet 2006, 7: 229-237)

67. Zhang Y-M, Xu S*. 2005. A penalized maximum likelihood method for estimating epistatic effects of QTL. Heredity 95: 96-104

68. Luo L, Zhang Y-M, Xu S*. 2005. A quantitative genetics model for viability selection. Heredity 94: 347-355  (Featured Article)

69. Xu C, Zhang Y-M, Xu S*. 2005. An EM algorithm for mapping quantitative resistance loci. Heredity 94: 119-128

70. Zhang Y-M, Xu S*. 2005. Advanced statistical methods for detecting multiple quantitative trait loci. Recent Research Developments in Genetics and Breeding 2: 1-23 (Invited Review)

71. Hansen C, Yi N, Zhang Y-M, Xu S, Gavora J, Cheng HH*. 2005. Identification of QTL for production traits in chickens. Animal Biotechnology 16: 67-79

 

2004

72. Zhang Y-M, Xu S*. 2004. Mapping quantitative trait loci in F2 incorporating phenotypes of F3 progeny. Genetics 166: 1981-1993

 

2003

73. Zhang Y-M*, Gai JY, Yang Y-H. 2003. The EIM algorithm in the joint segregation analysis of quantitative traits. Genetics Research 81: 157-163

74. Tao A, Zeng H, Zhang Y-MXie G-S, Qin F-L, Zheng Y-L, Zhang D-P*. 2003. Genetic analysis of the low critical sterility temperature point in photoperiod-thermo sensitive genic male sterile rice. Acta Genetica Sinica 30(1): 40-48

 

 

中文学术论文

1 冯建英, 岳秀丽, 倪元丽, 章元明. 多歧性状上位性关联分析的分层广义混合线性模型方法. 南京农业大学学报, 2017, 40(02): 211-218.

2 冯建英, 温阳俊, 张瑾, 章元明. 植物关联分析方法的研究进展. 作物学报, 2016, 42(07): 945-956.

3 狄佳春, 陈旭升, 赵亮, 章元明. 利用主基因+多基因混合遗传分析解析陆地棉铃重与铃壳率杂种优势的遗传基础. 棉花学报, 2016, 28(02): 115-121.

4 张瑾, 岳超, 章元明. 基因表达数据聚类分析方法的比较. 南京农业大学学报, 2014, 37(06): 1-6.

5 杨胜先, 牛远, 李梦, 魏世平, 刘晓芬, 吕海燕, 章元明. 栽培大豆农艺性状的关联分析及优异等位变异挖掘. 中国农业科学, 2014, 47(20): 3941-3952.

6 谢尚潜, 耿青春, 章元明. 偏分离群体连锁图矫正和QTL定位软件包DistortedMap的研制. 南京农业大学学报, 2014, 37(05): 13-18.

7 曹锡文, 刘兵, 章元明. 植物数量性状分离分析Windows软件包SEA的研制. 南京农业大学学报, 2013, 36(06): 1-6.

8 牛远, 谢芳腾, 布素红, 谢尚潜, 韩世凤, 耿青, 刘兵, 章元明. 大豆粒形性状QTL的精细定位. 作物学报, 2013, 39(04): 609-616.

9 闫宁, 谢尚潜, 耿青春, 徐宇, 李广军, 刘兵, 汪霞, 李其刚, 章元明. 利用Bayes分层广义线性模型剖析大豆籽粒性状的遗传基础. 作物学报, 2013, 39(02): 258-268.

10 章元明. 植物数量遗传学的建立、发展与展望. 南京农业大学学报, 2012, 35(05): 19-24.

11 牛远, 徐宇, 李广军, 王云清, 刘晓芬, 李河南, 魏世平, 章元明. 大豆籽粒大小和粒形的驯化研究. 大豆科学, 2012, 31(04): 522-528.

12 汪霞, 徐宇, 李广军, 李河南, 章元明. 大豆株高QTL定位及Meta分析. 南京农业大学学报, 2011, 34(03): 13-19.

13 魏世平, 刘晓芬, 杨胜先, 吕海燕, 牛远, 章元明. 中国栽培大豆群体结构不同分类方法的比较. 南京农业大学学报, 2011, 34(02): 13-17.

14 匡峰磊, 汪霞, 周玲, 章元明. 关联图分析:一种基于连锁图的QTL综合分析方法. 科学通报, 2010, 55(29): 2828-2836.

15 汪霞, 徐宇, 李广军, 李河南, 艮文全, 章元明. 大豆百粒重QTL定位. 作物学报, 2010, 36(10): 1674-1682.

16 李广军, 李河南, 程利国, 章元明. 大豆叶绿素含量动态表达的QTL分析. 作物学报, 2010, 36(02): 242-248.

17 程利国, 李广军, 刘玉芹, 李河南, 章元明. 大豆对大豆花叶病毒Sa株系抗扩展特性的遗传分析. 南京农业大学学报, 2009, 32(04): 13-17.

18 李广军, 李河南, 程利国, 章元明. 大豆对豆卷叶螟抗性的QTL定位. 中国油料作物学报, 2009, 31(03): 365-369.

19 李河南, 汪霞, 李广军, 程利国, 何小红, 张国政, 章元明. 大豆粒形的主基因+多基因混合遗传. 大豆科学, 2009, 28(01): 16-20.

20 李广军, 程利国, 张国政, 何小红, 智海剑, 章元明. 大豆对豆卷叶螟抗性的主基因+多基因混合遗传. 大豆科学, 2008(01): 33-36+41.

21 李梦, 林飞, 黄菊, 章元明. QTL精细定位影响因素的数学模型. 中国农业科学, 2008(02): 340-346.

22 万素琴, 邵艳华, 袁有禄, 章元明. F2:3设计全基因组标记的Bayesian分析. 作物学报, 2007(12): 1943-1948.

23 朱成松, 王付华, 王建飞, 李广军, 张红生, 章元明. 回交、DHRIL偏分离群体遗传图谱的重新构建. 科学通报, 2007(08): 918-922.

24 侯北伟, 窦秉德, 章元明, 李生强, 杨晋彬, 刘福霞, 杜金昆, 孙其信. 小麦雌性育性的主基因+多基因混合遗传分析. 遗传, 2006(12): 1567-1572.

25 林飞, 万素琴, 程利国, 吕海燕, 李广军, 章元明. 基于分离亚群体QTL定位的模拟研究.遗传, 2006(11): 1407-1410.

26 林飞, 章元明. 含有致死基因型的质量性状基因定位的统计方法.南京农业大学学报, 2006(04): 19-22.

27 章元明. QTL定位的压缩估计方法(英文). 遗传学报, 2006(10): 861-869.

28 章元明. 作物QTL定位方法研究进展. 科学通报, 2006(19): 2223-2231.

29 罗铮锋, 盖钧镒, 章元明. 玉米种质保持中的适宜样本容量. 作物学报, 2004(07): 675-679.

30 王永军, 喻德跃, 章元明, 陈受宜, 盖钧镒. 重组自交系群体的检测调整方法及其在大豆NJRIKY群体的应用. 作物学报, 2004(05): 413-418.

31 葛秀秀, 张立平, 何中虎, 章元明. 冬小麦PPO活性的主基因+多基因混合遗传分析. 作物学报, 2004(01): 18-20.

32 章元明, 黄方, 喻德跃, 盖钧镒. DHRIL群体中两对重叠基因控制性状的定位. 遗传, 2003(01): 57-59.

33 陶爱林, 曾汉来, 章元明, 谢国生, 秦发兰, 郑用琏, 张端品. 光温敏雄性不育水稻不育临界温度性状的遗传分析(英文). 遗传学报, 2003(01): 40-48.

34 章元明. 生物统计学在农科大学生素质教育中的作用. 高等农业教育, 2002(12): 68-69.

35 章元明, 盖钧镒. 利用P1F1P2F2F2:3家系五世代联合分离分析的拓展. 生物数学学报, 2002(03): 363-368.    30

36 詹秋文, 盖钧镒, 章元明, 喻德跃. 大豆对食叶性害虫的抗性遗传.中国农业科学, 2002(08): 1016-1020.

37 章元明, 盖钧镒, 戚存扣. 数量性状分离分析的精确度及其改善途径. 作物学报, 2001(06): 787-793.    23

38 詹秋文, 盖钧镒, 章元明, 孙祖东. 大豆对斜纹夜蛾幼虫抗性遗传的发展表达过程. 遗传学报, 2001(10): 956-963.

39 章元明, 盖钧镒, 王永军. 利用P1P2DHRIL群体联合分离分析的拓展. 遗传, 2001(05): 467-470.    68

40 章元明, 盖钧镒, 戚存扣. 植物数量性状遗传体系检测中回交或自交家系重复试验数据的分析方法. 遗传, 2001(04): 329-332.    5

41 章元明, 盖钧镒. 两对互作基因重组率EM算法估计的模拟研究. 南京农业大学学报, 2001(02): 24-27.

42 章元明, 盖钧镒, 戚存扣. 利用家系群体鉴定数量性状多基因的存在. 生物数学学报, 2001(01): 96-102.

43 戚存扣, 盖钧镒, 章元明. 甘蓝型油菜芥酸含量的主基因+多基因遗传. 遗传学报, 2001(02): 182-187.    38

44 章元明, 盖钧镒. 数量性状分离分析中分布参数估计的IECM算法. 作物学报, 2000(06): 699-706.

45 章元明, 盖钧镒, 王建康. 利用回交B1B2F2群体鉴定数量性状两对主基因+多基因混合遗传模型. 生物数学学报, 2000(03): 358-366.

46 胡中立, 章志宏, 章元明. 质量-数量性状遗传参数估计的P1P2DH联合分析方法. 作物学报, 2000(05): 631-634.

47 盖钧镒, 章元明, 王建康. QTL混合遗传模型扩展至2对主基因+多基因时的多世代联合分析. 作物学报, 2000(04): 385-391.    82

48 章元明, 盖钧镒. 利用DHRIL群体检测QTL体系并估计其遗传效应. 遗传学报, 2000(07): 634-640.    59

49 章元明, 盖钧镒, 张孟臣. 利用P1 F1 P2F2F23世代联合的数量性状分离分析. 西南农业大学学报, 2000(01): 6-9.    82

50 章元明, 盖钧镒. 数量性状主基因+多基因混合遗传分析中鉴定多基因存在的IECM算法. 生物数学学报, 1999(04): 429-434.    6

51 章元明, 曾子建, 张跃. 半数致死量LD50的百分偏差和渐近方差.生物数学学报, 1999(01): 122-126.

52 章元明. 半数致死量LD50的刀切估计及其抽样方差.畜牧兽医学报, 1997(06): 21-24.

53 吴克亮, 章元明, 田有庆, 符俊. 四川白鹅产蛋曲线数学模型探索. 畜牧兽医学报, 1996(01): 51-54.

54 章元明, 田有庆. 四川白鹅产蛋数学模型的研究. 西南农业大学学报, 1995(06): 550-552.

55 章元明, 盖钧镒. 大豆地方品种种质保持中适宜样本容量的研究.中国农业科学, 1995(S1): 70-75.

56 章元明, 焦敏, 苟平, 张永祥, 唐锡政. Logistic模型配合家禽生长资料参数估计方法比较的Monte Carlo研究. 四川畜牧兽医学院学报, 1995(03): 44-48.

57 章元明. 非线性模型参数估计的一种新方法. 生物数学学报, 1994(04): 185-188.

58 章元明, 盖钧镒. Logistic模型的参数估计. 四川畜牧兽医学院学报, 1994(02): 46-51.

59 章元明, 盖钧镒. 作物种质资源的搜集与保持. 世界农业, 1993(10): 14-15+48.

 

专著与教材

1 盖钧镒、章元明、王建康。植物数量性状遗传体系。科学出版社,2003

2 章元明主编。生物统计学(生物技术专业用,农业部十二五规划教材)。农业出版社,2017

3 章元明著。数量性状分离分析与R软件。金琅学术出版社,2017

4 徐辰武、章元明主编。生物统计与试验设计。高等教育出版社,2015

5 谢庄、章元明主编。水产试验统计学。中国农业科技出版社,1998

6 Zhang Y-M*. 2012. F2 designs for QTL analysis. In: Scott A. Rifkin (ed.), Quantitative Trait Loci (QTL): Methods and Protocols. Methods in Molecular Biology 871: 17-29. DOI 10.1007/978- 1-61779-785-9_2.Springer Science + Business Media, LLC

7 盖钧镒主编,章元明统稿。试验统计方法。农业出版社,2000

8 宁海龙主编。金益、章元明主审。试验设计与统计分析(第二版)。中国农业出版社,2016

 

 

 

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